João Mestre Madeira Lopes, 2004, Modelação Matemática do Transporte de Sedimentos no Estuário do Guadiana, MSc in Mechanical Engineering, Universidade do Minho, Portugal.

Alberto Monteiro Brito, 2005, Impacte das ETARs na Qualidade Microbiológica da Água na Ria Formosa e Consequências para  a Produção  Conquícola:
abordagens experimental e numérica, MSc in Sanitary Engineering, FCT Universidade Nova de Lisboa, Portugal.

João Janeiro Leitão Lopes, 2006, Modelling hydrocarbon dispersion in two coastal ecosystems: Kongsfjord (Norway) and Patos Lagoon (Brazil), European Joint Master in Water and Coastal Management, Geophisical Institute, University of Bergen, Norway.

Mehmet Cüneyd Demirel, 2007, Forecasting streamflow by artificial neural networks, auto-regressive models and implementation of mapserver for ria Formosa, European Joint Master in Water and Coastal Management, University of Cadiz, Spain.

Bárbara Mascarenhas Xavier, 2008, Benthic macrofauna and hydrodynamic modelling assessment. Consequences of a waste water discharge in the Almargem stream, South Portugal, MSc in Marine and Coastal Studies, FCMA, University of Algarve, Portugal.